NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307471_100006035

Scaffold Ga0307471_100006035


Overview

Basic Information
Taxon OID3300032180 Open in IMG/M
Scaffold IDGa0307471_100006035 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7652
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006466Metagenome372Y
F013280Metagenome / Metatranscriptome272Y
F075877Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0307471_10000603510F075877GAGLKGQLVFRLGIGNGDGFDVLDSKEEERVLHRIENRGSFNTLDVAVQLHYSVNDGGRHRVHEDHYILRLVFQPGRVEVLVHHLKGVRRVEPDELIRLIVQELNVELTRDRYSQIQLEAVDI
Ga0307471_1000060354F006466GAGLLLIVWGKVARDLYGLPGPDSALLLLQFMLVIFLMEASTTTLTFDHAIKQLEGKEDDLSAVARMRVTRWERLQLLNLGKLTIASFGLTLGLLILGSLISVSVNHIAFSGILVLAAFVAIFILLTYRREPEERGRPVD
Ga0307471_1000060357F013280N/ALNTIKLLFWSGIAYALLLVLVRDVFPSESTPTISLTGVPLIVIVVMIARDLARKSTSPTIRRPIATTTGFRGSPLQFLSGQFRVATHASNSYFENVVRVRLRELLTAKVAVETGEENETVRRILSDPRVGPELLQDDSLYRMLYGPTPQKGPARINLINDAIDLIGAWNG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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