NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307471_100012447

Scaffold Ga0307471_100012447


Overview

Basic Information
Taxon OID3300032180 Open in IMG/M
Scaffold IDGa0307471_100012447 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5810
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011479Metagenome / Metatranscriptome290Y
F017116Metagenome242Y
F020766Metagenome / Metatranscriptome222Y
F069900Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0307471_1000124474F069900N/AMTSLTGVFLLLFSVLVVVLDAANFFAIGISFFIMLIGIMLVMVGAMGGFQKKPDATPTHTQVVTEIVKVRCKYCGALNLETSQDCSNCGAHL
Ga0307471_1000124475F020766N/AVVDLLTGGIVLFAIMAGAGIVPLIMAFRVKVRSLRILSLLLGLFAVVHGFYHLASGFQQEFLAEAVFEPISLVLLVGLGAYYSKVGIR
Ga0307471_1000124476F017116AGGTGGMVLDDITSVFEMISLVLILVAFAIFARLAIKGKSLGSFRFQLSIFLLIWVLSEIPHIAGTLGLISTAAYSDIGLYLHATSMAVFALFVGWRSIKFATLPIPPTGSTSVATEPPKRIKG
Ga0307471_1000124477F011479GAGMSFDELVSESVTETMSKILGGDTWKAINFFFDMKTIAREPEDFAALLAKVFGATSNVLQKKIGETILGKVGAVQQTSSSLDFRQILRLAKAKFPRQPLPDQLGL
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Institute for Fundamental Biomedical Research
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