NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307471_100021722

Scaffold Ga0307471_100021722


Overview

Basic Information
Taxon OID3300032180 Open in IMG/M
Scaffold IDGa0307471_100021722 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4722
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029697Metagenome / Metatranscriptome187Y
F043312Metagenome / Metatranscriptome156N
F069956Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0307471_1000217222F029697GAGGMLLMGLILLIFGVIAEAMYIIANKVAYSGIVADAYLTGGIVFIMIGFVLMLASVKIPKLRVP
Ga0307471_1000217223F043312AGGMRTPNITLIHETISLCFDQVLSTMGEVTKRVTYDFLARKGIARVDVSSRFGDVEALLVQLYGQGGRSVMIGTLAKLCEEYSIPLNLGYSDTLTNRMSQLTEDILMRKLTPKHFRKDVDTTTFEDKTGTYADWTD
Ga0307471_1000217224F069956GGALDRSEFDSIIESSLSNTLKTVGEDCVPSVLALLGGSRGPADSLVAHLGDIDTTLDELFGKFSKIIKQVTILQACSQLKMDPPGLGGSLLWMVEELRSTLWKAKS
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