NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307471_100092517

Scaffold Ga0307471_100092517


Overview

Basic Information
Taxon OID3300032180 Open in IMG/M
Scaffold IDGa0307471_100092517 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2710
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006299Metagenome / Metatranscriptome376Y
F010312Metagenome305N
F014110Metagenome / Metatranscriptome265Y

Sequences

Protein IDFamilyRBSSequence
Ga0307471_1000925171F006299N/AMTVPAEVVLIEVPEIVEFNQLKGRTATEALTELVEEFGVVYVTAMTRQGCSGCETQKPLFKTLAEKLTGENTGRVRFRSLHVNYQGGDRRESWSSKGVFGHAAYPTYMIHVKSHVGPLEIYRSVYPPMEELEKQIKESFELADFYKTEAENASRLISERP
Ga0307471_1000925172F014110AGGLKPKTGSKSVGKTKKEQQIVDLGKLPDKVGVAVDFLREHVKSAKGRVSTKGNQIQVEGLKHKEVKLLLHKFLRHNGLDDHRVLSQSGTLEIVPQHLVVHSRPQEGTPPPASATMPYLFPGASAPVPTSKKNKKS
Ga0307471_1000925174F010312N/AMKCLPLYGLFRLEMASPKKELMMLRVFRLTLPAALLVSLTWMTLFTDAARQAVINSLGANANIIIFILGLFLVVGLYWVMGVYERKILYENHRSRPAF
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