NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307471_100278390

Scaffold Ga0307471_100278390


Overview

Basic Information
Taxon OID3300032180 Open in IMG/M
Scaffold IDGa0307471_100278390 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1746
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008324Metagenome / Metatranscriptome335Y
F010429Metagenome / Metatranscriptome304Y
F094291Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0307471_1002783903F010429AGCAGVRPSIKGWETRNEADNDKRWQDMNPDEQAVLIRQISGAVNGLQFRVQDLEEAVKALQERLKKP
Ga0307471_1002783905F008324GGAGGMTEKLIVSVSYGERGYVGSHPDLRAPVMALSLDGLRRKVKALLPEEAVVVLQLDRGARLERDRRRLTGRPRPGYRPSA
Ga0307471_1002783906F094291GGAGMVIASNNKTSVMLGLLVCALGISVSSSADARKANRQGTYVGQGYPNPTPSITAMPRNTPKANIVCWTACGQ
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