NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307472_100147525

Scaffold Ga0307472_100147525


Overview

Basic Information
Taxon OID3300032205 Open in IMG/M
Scaffold IDGa0307472_100147525 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1712
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000430Metagenome / Metatranscriptome1149Y
F013364Metagenome / Metatranscriptome272Y

Sequences

Protein IDFamilyRBSSequence
Ga0307472_1001475252F000430AGGMNFMIRPRKQNTTPVAEPETGRPAGTGEEWLGRNRSSKRRLWERLNPLSRKQIRVIAEALALQQTHAQLPEPVSARLSATIGEIERLVARTRALLAEVARRTPPRA
Ga0307472_1001475253F013364GGAMAVPNKRGPLLFATCVLTFCAIGLSARADEIRLKDGKKLYGVIVAYEDSMFKVKTDFGFVLVEKDKIESIIPSAPGTKSEPAPPTKKDAAPHPVKPA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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