NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316207_10017395

Scaffold Ga0316207_10017395


Overview

Basic Information
Taxon OID3300032212 Open in IMG/M
Scaffold IDGa0316207_10017395 Open in IMG/M
Source Dataset NameMicrobial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-week pyrite
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4709
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Maine
CoordinatesLat. (o)43.8603Long. (o)-69.5781Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000913Metagenome / Metatranscriptome838Y
F010198Metagenome / Metatranscriptome307Y
F016661Metagenome245Y
F065668Metagenome127N
F095309Metagenome105N
F097118Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0316207_1001739510F000913AGGMKYFYVEHYGEEIRIEWNESATFNLQIPVGGQWVDYHCFTCYGIESEHEALEHAMEVLLESENEVA
Ga0316207_100173954F065668GGAMLYTIWVGGVEVTPFLTNREEAYRIASNWRNDGYSDVIVERYKPYEYHS
Ga0316207_100173955F095309GAGGMSYSEYRKKLRMLSAKYNEAYKRYGWGADTTRKLRQQKIDLRAKYAVHSFDYAVESLTSKGIL
Ga0316207_100173956F016661GAGGMNYSAERYLALKQFEREQKRDKWRAILWNVSITGIFVMVVIQVMRGFL
Ga0316207_100173957F097118AGGTGGMITFPSGLKFGRGEDSLVNSLFTSDSTNDGWYTVTGRKNKTMRFFAGNGKPLFYIVSNKHGITSGNLTNSGEKFYYMAGTSSLTSKKLGLDKLDYTTEKTLITNIIEAA
Ga0316207_100173958F010198N/AVGVIKLIKLYIGDNMRIANKDGFRFGESAYLIGHEFGLICVSYGNNEQEALDNAVDEGYMDSERMEDADYKEYDANGWHDSFICLGNASEPFWSEYLWIKPANERRKEVA
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Biomedical Sciences Research Center "Alexander Fleming"
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