NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316198_10094431

Scaffold Ga0316198_10094431


Overview

Basic Information
Taxon OID3300032251 Open in IMG/M
Scaffold IDGa0316198_10094431 Open in IMG/M
Source Dataset NameCoastal sediment microbial communities from Oude Bieten Haven, Netherlands - site A anoxic
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1774
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina ovata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Sediment → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameNetherlands
CoordinatesLat. (o)51.4666Long. (o)4.071Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045104Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0316198_100944313F045104N/AMAQHAPKPRAAQSSNAPPLCGLYSGPRRSAAVLFDPVTQRQLVLSLANTAQARATLLDWLADHSAHLVIPDTLLAAPCLHHPNHRPLTVWIAPSALLEAIRFTSGLTTRAPKQTAALLARWPTAPALRPFLRRLTSSHPPDQLSLL
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