NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316208_1023511

Scaffold Ga0316208_1023511


Overview

Basic Information
Taxon OID3300032254 Open in IMG/M
Scaffold IDGa0316208_1023511 Open in IMG/M
Source Dataset NameMicrobial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month chalcopyrite
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2359
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Maine
CoordinatesLat. (o)43.8603Long. (o)-69.5781Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016661Metagenome245Y
F065668Metagenome127N
F097118Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0316208_10235112F065668AGGAGGMFYTIWVGGVEVNSHLVSREEAYRIASNWRNDGYTDVIVERHKPYA
Ga0316208_10235114F016661GGAGMNYNAERYLALKQFEREQKRDKIRAVLWNVSIGGIYAMVVIQVFTGVIS
Ga0316208_10235116F097118AGGMIKFPSGLKFGRGEDSLVDSLFTGDSTNDGWYTVTGRKNKTMRFFTGNGKPLFYIVSNKQGITSGNLTSNDNKFYYMAGTCSLTSKKLGLDKLDYTTEKTLITDIIGVT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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