NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316209_1105889

Scaffold Ga0316209_1105889


Overview

Basic Information
Taxon OID3300032255 Open in IMG/M
Scaffold IDGa0316209_1105889 Open in IMG/M
Source Dataset NameMicrobial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month chalcopyrite
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)748
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Maine
CoordinatesLat. (o)43.8603Long. (o)-69.5781Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034389Metagenome175Y
F039583Metagenome163N

Sequences

Protein IDFamilyRBSSequence
Ga0316209_11058891F034389GGAGMNLYTEAKVMATEALEQAEGCFDTAQDYLHQTCDGHEVSIYYHKAIQFCAEQNTSDGEAWLDDCGGIAQEGDTFGTIACRIAFATLYVRAQDALYEMQDELEAAA
Ga0316209_11058893F039583AGGAGMTSEKQTFQNQANRMAARKKFLDALQEEQREALQKSFDAMQNCVWMLNECNDLYVSDVAKLESAFHRLQSIFFDIEPSEWQLERFAEHG

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