NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315271_10095057

Scaffold Ga0315271_10095057


Overview

Basic Information
Taxon OID3300032256 Open in IMG/M
Scaffold IDGa0315271_10095057 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2255
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5107Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000926Metagenome / Metatranscriptome832Y
F003114Metagenome / Metatranscriptome506Y

Sequences

Protein IDFamilyRBSSequence
Ga0315271_100950573F003114N/AMKTQITPESVLQNLAQIQRLDRGSVSVIRQGPAGPYYNHQCYENGRNVSRYVPAEQVEELQAAIADHQRFQQLVQQYVELMVQKTRAQRQAGSKKKTARPISSWRKTWKSTS
Ga0315271_100950574F000926GGAMVQFQGQEPNGQAVQQLEVLVRTALFKPATALVGFLLQAAADRIDAAYQPPPGQARKGRETRQVDGLFGSFPLARDYYYHAGKKQGHYPADAALGLETGQTPALARLVCLEGADETSYQKAEN
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