NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315271_10260412

Scaffold Ga0315271_10260412


Overview

Basic Information
Taxon OID3300032256 Open in IMG/M
Scaffold IDGa0315271_10260412 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1413
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5107Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038201Metagenome / Metatranscriptome166N
F045645Metagenome152N

Sequences

Protein IDFamilyRBSSequence
Ga0315271_102604122F038201GGAMGFIGGETQTQVGPSLDGTRSAAGQLYNEAMNQLDSPAVDKGHSSSARSNHVDVFTRNVQFMVSQVAGEHSEQTFQMLQRTFPGLRNFEQLRTFAKLYVHSGLRPLQLRPLPSDVDPHRLKGDLALRFSGGMIVLARDERIVCRGADAYGPFDPMRAASFSCKLSAESPTNDEHGHILDPEQCVASPVGVYPEIA
Ga0315271_102604123F045645GAGMLKNVAGVFHVRPIIRNQVLTLRQGRRGHELVQDDGQAVRVVAVSDAKPGLLSFAAINGIPVKNYTDMAVPKPETTNKDAVPVPELSM
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