NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306920_100132081

Scaffold Ga0306920_100132081


Overview

Basic Information
Taxon OID3300032261 Open in IMG/M
Scaffold IDGa0306920_100132081 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3715
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013218Metagenome / Metatranscriptome273Y
F024377Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0306920_1001320811F024377N/AVFGENWSKTDEETWRILQARSELKNDPDLGRRNMGITVVIL
Ga0306920_1001320812F013218AGGAMANLLSSGLEKVSLNKRYIFWFWLLNLTLAEFGTAGFRRAAHAILDRNLYAERLVRGFDLGVFLELLSKPEFGTLNSMTYPSLYFGFVFFVATALFLPGIFSGYASRYRLPREEFFRACGRNLWRFIRIMIIAGVIMGIIAGVLFSANDAMVKKADESTNEKLSFELEMVGLGVIFLVMTALRIWFDLAEVDAVLNDQRAIRKSIAAAFRHTFRSLARLFTSYLVVTIAAAIMLVAGLWLWMKLIAPENVFGAFAIGQVTLLLLLIPRFWQRGIAVSYWQQWMLAPLAPTAVVGSSPIPISSAPESPAAIDSLPANAPPIEPLQS

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