Scaffold Ga0306920_100240196

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0306920_100240196

Scaffold Ga0306920_100240196

Overview

Basic Information
Taxon OID	3300032261 Open in IMG/M
Scaffold ID	Ga0306920_100240196 Open in IMG/M
Source Dataset Name	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2703
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans → Phytohabitans flavus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location Name	Puerto Rico: Rio Grande
Coordinates	Lat. (^o)	18.321	Long. (^o)	-65.8172	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007994	Metagenome / Metatranscriptome	341	Y
F061154	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0306920_1002401961	F007994	AGTAGG	MGEPGQAGAAASPRAEPAAGRAGMILTPDQRVRVFISSTLGELAEERAAA
Ga0306920_1002401966	F061154	N/A	GCHHPGRSDLLSSIRATIRMYQKLFALRTYRRRLIVALLAFFGATVTVAQLALWIAGQTASTTLAFSLVVLTPIGLVFALRASLPKADISFRHDSATAPVRVLIGDIFATDDAVIVITMNRHFDTTHPWVSGDSLVTQLIQRHYADRPDELRRAILKELSLQNEAEQPVGEIVRISASKNSYLLLAVADRHEQTRSSVAVDAVWSSLSRLWQYARLNNISRLRVPVIGSGFARAQVGRVPLIILLLTSYLTAAMEMPVCGLEIVLHPDDADLDLLELVKAYCEILGYRAIDQKPLGEGYLALHSR

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