NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306920_100284647

Scaffold Ga0306920_100284647


Overview

Basic Information
Taxon OID3300032261 Open in IMG/M
Scaffold IDGa0306920_100284647 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2464
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028679Metagenome190Y
F034783Metagenome / Metatranscriptome173Y
F063392Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0306920_1002846471F034783AGGGGGMARTLLAIVGVIASLSGAHVASAFTTHPVDPVVTFDRPADPDQLTDKMSNGQSGGTTFGLPGGLPGGFKLQFSGPSSSNTQNSPFVEFPSTVFVPSE
Ga0306920_1002846472F063392GGAGMGATLDLTPAAKIALIATITAAIQAAVAEERQQLTGVL
Ga0306920_1002846473F028679GGAGMRGLILASAVGLAFVASAQAAPLAPNPASIELGAAPSVELVRDDCGRGWHRTRWRDQWGNWQ
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Institute for Fundamental Biomedical Research
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