NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306920_100341368

Scaffold Ga0306920_100341368


Overview

Basic Information
Taxon OID3300032261 Open in IMG/M
Scaffold IDGa0306920_100341368 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2229
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000037Metagenome / Metatranscriptome4230Y
F002001Metagenome / Metatranscriptome606Y
F005086Metagenome / Metatranscriptome412Y

Sequences

Protein IDFamilyRBSSequence
Ga0306920_1003413682F002001N/AVSPYLSQKLTRPLVTKDGGTLRTVLDARSYMLRLSKARERDTRWQRPAELLLGQADVADFSKQVELALFYDAKLDLTAMT
Ga0306920_1003413683F000037GAGVKQQPLILKRASASRSSGEWGDDDYDVVADGAVVGRIMKAAAVPVGMSWMWTLAFGHREDRTPTHGYAATREAAMAAFATSWRRERPR
Ga0306920_1003413684F005086N/AMNDEDYVVVYADSPEEAMLKLRDAGLEPVKAESFDAHPRRLTN
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