NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306920_100837638

Scaffold Ga0306920_100837638


Overview

Basic Information
Taxon OID3300032261 Open in IMG/M
Scaffold IDGa0306920_100837638 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1348
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028208Metagenome / Metatranscriptome192Y
F085296Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0306920_1008376382F028208GGAGMQERTAYRLAMLRNGFQPLLNDCKRPIEKGWPKRRVDEAEILSWDRSALLSTGMRIDDDLAVIDADVADASLVAALADALNKSFPALFARGLVRHAGGPKEAWIARVDEPFRRLASRRWYRGSDPDDPAAPKHQVECFGSLGTRQFAVDGPHARNRQGEIIDTYQFAGGASPATTLRASLPVLPKAAYAAACDLFDTIAVAAGLTAIKETRNGRSGATPRVFELDADTEVETQDHGAMTVAELECLMRARRARGDAPVSTVRCSGSFHDSTRVRTDSHLINWSRRYGLSIWDAMTETTWHRRERAPSARFEFLGRLQARNPFA
Ga0306920_1008376383F085296AGGAMNEPFDGDAISRADREFLVSLDDHPLMRHPRYSVPPPPRPNYDGCITIAEKQTAQEMCFPAALEWMLVNYAYYSGAFMGKGGIISLVDGKMGTIA
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