NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316189_10038443

Scaffold Ga0316189_10038443


Overview

Basic Information
Taxon OID3300032272 Open in IMG/M
Scaffold IDGa0316189_10038443 Open in IMG/M
Source Dataset NameCoastal sediment microbial communities from Maine, United States - Lowes Cove worm burrow
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4176
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina ovata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Maine
CoordinatesLat. (o)43.9353Long. (o)-69.5766Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045104Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0316189_100384431F045104N/AMAKYAPGPRPAPLRNAPPWCGLWSGPRRSAAVLFDPVIHRQLVLSLANTEQARATLLDWLAEQSAHLVIPDTLLAQPGLHHPNQIPVAVWIAPSALLEAIRFTTGLTTRAPKQTAALLARWPTAPALRPFLRRLTASRSPGQLSLL
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