Scaffold Ga0316197_10003902

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316197_10003902

Scaffold Ga0316197_10003902

Overview

Basic Information
Taxon OID	3300032273 Open in IMG/M
Scaffold ID	Ga0316197_10003902 Open in IMG/M
Source Dataset Name	Coastal sediment microbial communities from Oude Bieten Haven, Netherlands - site A oxic
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10602
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (72.22%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Sediment → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	Netherlands
Coordinates	Lat. (^o)	51.4666	Long. (^o)	4.071	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032659	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316197_100039022	F032659	GAG	MISNVYQWRRWESKTSDFVPIRATTDNHGKPDPELPETKDSEKHFRETALPTGKIERETAQGGANVGDMPNAETLGRLAREVLSNSRHAESRELARAVLQLLAGSKKQP

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