NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316203_1014169

Scaffold Ga0316203_1014169


Overview

Basic Information
Taxon OID3300032274 Open in IMG/M
Scaffold IDGa0316203_1014169 Open in IMG/M
Source Dataset NameMicrobial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2400
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Maine
CoordinatesLat. (o)43.8603Long. (o)-69.5781Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000613Metagenome / Metatranscriptome985Y
F003678Metagenome / Metatranscriptome474Y
F058963Metagenome / Metatranscriptome134Y
F106095Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0316203_10141691F058963N/APVVTKAALRKTKTTVRRLKSMCDMYDSLRPTATRRKSPMRRASTTLISNK
Ga0316203_10141692F000613AGGAGMPLVKKRLSIAAGATSDQVLTGTTYEYVDPGTRIVVAAAVDTVGSATADTTMDFNVNNAEFSKNASVSALVTGEPFGWNGNYTMNDMVTTGQVRNRPVITFTNGTAATRTVDVAVFIGG
Ga0316203_10141694F003678N/AMDQFMLYAPLIIASIALFLCLYACVRVGQFINASKELDWDAVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMMQLMQRQPNQQMNGTIKNVGG
Ga0316203_10141695F106095GGTGGMSFLSNLIKKAAPVVATVAAGTPIGTAARVVTVAQEQQERKYQKKLAIDRQAAKEKQMSEIFGSGSYGLGRVQSPMTGSRVQTNNAGFGSSFGSFLGDIGSNIVGPFSALFSQVRPFISQQSTGQPALPTRTNFGGQESQSSGVTEGFVGGIPNVLGQAAKFLRTPQGQIGTGLLTGIGGSMLAGGNGGMRITRKMKSQYRAVLNLAQGDYDQAASMIGVSTDQFIMVLLKRFRNDGPVVTKAALRKTKTTVRRLKSMCDMYDSLRPTATRRKSPMRRA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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