NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316203_1072909

Scaffold Ga0316203_1072909


Overview

Basic Information
Taxon OID3300032274 Open in IMG/M
Scaffold IDGa0316203_1072909 Open in IMG/M
Source Dataset NameMicrobial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)978
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Maine
CoordinatesLat. (o)43.8603Long. (o)-69.5781Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032993Metagenome / Metatranscriptome178Y
F051059Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0316203_10729093F032993GGAGMQINKRTESLPNMEVPQFPVSMLQHMEQMGLLPVSHEDDGVNNIELPWRSNTNYFRRDVLDERGEPLF
Ga0316203_10729094F051059AGGAGMYYALDIYSKTTKKMFAYHSSDSRKDILKLKEMYSKNEFVYIKECYGETDADKQTYRESSKYGSTTVSS

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