NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315270_10096365

Scaffold Ga0315270_10096365


Overview

Basic Information
Taxon OID3300032275 Open in IMG/M
Scaffold IDGa0315270_10096365 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1726
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5106Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013930Metagenome / Metatranscriptome267Y
F028913Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0315270_100963652F028913GAGMSLRTVVGVVRVVVWQGKDPMDQHWGCPVRERWGLRAHQQMSPALEERVAFTATLAGSYEAAAQVAGKWGCPVDDSVIHALVQRVGRVAQAKTQQRLKEPARESDPQRRASELALLMLDGWFARFRGPGWGKKRTEKDRV
Ga0315270_100963653F013930AGGMNSDKPAAQSLRDIELEVLEEGREWTRRRLEQRLQQEADRQGGVFPPQRPEGTSSTKRRDESAHRRRRGQSGGLAG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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