NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316202_10054026

Scaffold Ga0316202_10054026


Overview

Basic Information
Taxon OID3300032277 Open in IMG/M
Scaffold IDGa0316202_10054026 Open in IMG/M
Source Dataset NameMicrobial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1882
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Maine
CoordinatesLat. (o)43.8603Long. (o)-69.5781Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015990Metagenome250N
F035770Metagenome171Y
F054417Metagenome140Y
F087206Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0316202_100540261F015990GGAGMGKGSGRRIEDINKIRNNWDSIFKKRDKKQTTKVIIEFEMPGYPSIDDINNHVEKLLKEDKLTTLTKTLNA
Ga0316202_100540263F087206AGGMSNQYNEQTLENINHYVLEQDRKGLIDNEIDYMAFAHGLHPDDDRDEILEYIAESIFHEQTIGGLNENY
Ga0316202_100540264F035770AGGAMKRYKPITFGMAEYQYACHLRDTLGHTGEIIYPNKDTSKQDTDGVWLLLTITGERLGTVSPNGTVRLT
Ga0316202_100540266F054417AGGAGMSKFNKQKTIDKIIDDFGNCRMNSHWFPKSETQIEWSSHQEVYLILHQDKTYDYAEPKHLNMYVEDLEVQDLKEYARG
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