 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032277 Open in IMG/M |
| Scaffold ID | Ga0316202_10064423 Open in IMG/M |
| Source Dataset Name | Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1707 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC204P | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Maine | |||||||
| Coordinates | Lat. (o) | 43.8603 | Long. (o) | -69.5781 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017558 | Metagenome / Metatranscriptome | 240 | Y |
| F035490 | Metagenome | 172 | N |
| F048644 | Metagenome | 148 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0316202_100644231 | F048644 | N/A | YIGESQNGRSRVQLRRFNEKVYNVEVITSKKIKFLENFYFRRYYEARWIYKFKPKYNKQINTPPNLNTFLMKMFLWNENPQTDWIVPFSKNCPFKCKFLSHIQKQNKYIYNDYSKVWNKINLDKQLFIDGKKAFNHILDNKIEKTLGTKTRKTFKKRTEKLHN |
| Ga0316202_100644232 | F017558 | N/A | MFFIIFKNKNNILTSYSNQIFSTEAEATDYGSRSLKKKDVWQVVRYNKENYDKYWYKT |
| Ga0316202_100644233 | F035490 | N/A | AEKILLRIGNINPKNMNVVLEIPLDYAWGVYRKKCQNRVNEPTIRFTKTTFKEYKEHFKHIKKHCGNVDLTKIDVSYIADFLKKITDLKIDYKKKIFHTFSRIYDTQVGLGETDPLKINVFKTATFFKDDEKSEPITHPKINFDEWNFDRINTIISKVPSIPYQLMFKLMAETSCRPSEARAAQRKNFHFKRNIPVFEITNSVDYEKGLAPPKTKAGYRELEISARLKDQLIDYMNTLPEDQECIFLNSKGKFYDLKNMITCLDKVVESLNLTLPVARKTYFFRHWNASYWCYHGKYTNPSDLAMHMGDLDVKFINTTYIKKYAVSKESAKYSEHQNAHYNWN |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |