NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316202_10098748

Scaffold Ga0316202_10098748


Overview

Basic Information
Taxon OID3300032277 Open in IMG/M
Scaffold IDGa0316202_10098748 Open in IMG/M
Source Dataset NameMicrobial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1353
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Maine
CoordinatesLat. (o)43.8603Long. (o)-69.5781Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049548Metagenome146Y
F058952Metagenome134N
F060810Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0316202_100987482F049548AGGAGMNEREKQIAQATQDFLMALPDKIKNGHLGAVICTIFEAFELDHEERARICEGVLNVMLEADMRDDERAAQAADDVIARAAAKARK
Ga0316202_100987483F060810GGAGGMSIKVGLPDVTFNALCKLTEVDREFIGSPDYMGVAQFWSWSHPQKTRLSRASVSARRKIHHALVRDGLDLDGDTGIHRSIISIVLEKEEQGL
Ga0316202_100987484F058952GGAGMTNDTKPSAEQVKFWEGVKQIILDRADVIAELDGDERDALNELRCASMSISEDVNYLMDFCYIDVIEFCRAADFLCEEYSWNTSENEDKRDIGKKSLALAEALRGDAGDGPRLSYGQAKDFGSIYPLINGLLHTKPNKFQMERLAEHGITWEGEVDEH
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