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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032278 Open in IMG/M |
| Scaffold ID | Ga0310345_10009527 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8247 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (94.12%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean: North Pacific Subtropical Gyre | |||||||
| Coordinates | Lat. (o) | 22.7719 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000245 | Metagenome / Metatranscriptome | 1468 | Y |
| F001493 | Metagenome | 683 | Y |
| F006919 | Metagenome | 362 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310345_1000952714 | F006919 | GGA | MKSFVQHLKEFVSYSTSDLVFMNNGQGSASSGLMIPLSGPMFKRIWPDTIRTTVFHTTDLSGLEKLKRLEGGKKTISAFFSMMSRYMEGGIASGGGIVVEMEADVLVSAADDIMSQVDNKGRRWVEVSWFANAQRGGTGPKFAVVERELNDLIRNLVVKHLEPILGNRARTEHEYVLWGNMKRELKDSKKLSLVIKDYFDGVEKIIKKNSEVMSSIFYGYAKSKRQTENSWDEQIVNNIEITKVHIIDFTTKAPSLQGQFDASKDLAKSNSWPMKVWDATETMDLEIYTRQVAQAEVRTR |
| Ga0310345_1000952715 | F000245 | AGGA | MKTYSRFKESKLDDKMDKYVSDEIKKRKLAKFPVNATDDIKMRMKPNKPAFKFPSPTGEMMIHVFLRKMAPPAKKHTMAFNYQLEEK |
| Ga0310345_100095279 | F001493 | GGAG | MKSFNGYLKETFQDWKSGDAPAWTESLSTMLFDLPRAGFKDIHIPLSPSIMSRIWPKSVRSKAFHLTDFDGVKKLKGMQKGKRSISAFYNMDDYMIGSGIKTEGGYIVELEGDVLAASPDDISSQPDKSGRRWITVSSLMNSPFDSDPGLGGKAKLRGIEEDIKALLEEILKKNGEDVQMLGLTDVGMKWSNLGNKTGGKEKSLIIKDYIDGMEKIMKKYAKPLRSVLTDYTKKKTLEPDPDSGDVAMWDELVVNNFTIQKIHVGPEFSPDFAEVVKSDGGGRMYTFANKDDDIEGFPFELYFETGDMVDYINRALT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |