NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310345_10109371

Scaffold Ga0310345_10109371


Overview

Basic Information
Taxon OID3300032278 Open in IMG/M
Scaffold IDGa0310345_10109371 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2427
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.7719Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012859Metagenome276Y
F053973Metagenome140Y
F090253Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0310345_101093714F012859AGGMVRNRRGLAPWSLAREAGIESATVDGTIEVPQYVQPVLDTGFVDEKGDWKGSKSSDKDFFAFQLDEGIANGAYIITPGVRPDGTWPLDMTGYCDILFAIKSNQSGNFDIKAVMGPDALSFANLSPVNPAATLRGLTSGHSGTSIHALLDDSAESLTADVWNIFTIQERMRGQKLLQFKFTNNTGSAANIETAFMRLV
Ga0310345_101093716F090253N/AMVARRRKPRRSRAKKTFSIPLIETGAGLALLAQSDAGAHLKTMLGGNLQGGLDGLNQSIMKNKNLMIKSLATAFIAKQVVRGFGGSKILARIGPVVARA
Ga0310345_101093717F053973AGCAGGMTKDKFHFGATSVMREVPPGQTAVIKFNGKLEEIETEWGSKMKYPILLFSHPSYESISKEGIETVWQSNSQASRDL
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