Scaffold Ga0310345_10145667

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310345_10145667

Scaffold Ga0310345_10145667

Overview

Basic Information
Taxon OID	3300032278 Open in IMG/M
Scaffold ID	Ga0310345_10145667 Open in IMG/M
Source Dataset Name	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2110
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location Name	Pacific Ocean: North Pacific Subtropical Gyre
Coordinates	Lat. (^o)	22.7719	Long. (^o)	-158.0	Alt. (m)		Depth (m)	500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005948	Metagenome / Metatranscriptome	385	Y
F062151	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_101456671	F062151	GAG	MGTAIYDAADTVVSLLRDNWTSGRLPNVQKAWDKRSVGFGDSRSPQIILTPKTENITYFGLYGSDFWHDVTIDLDIRSYQNDVRHNNIVKEVQRIIKAKIRGGVDYTDLRVIASYSRSHYMRNMFNHIITVSLRKLNP
Ga0310345_101456674	F005948	AGG	MVELNHNVVSINSDTLIKGSHGVLVNVYVSKVGSGSNKVEFRNGTTGSAPIECTFFTAAQGTYVGINRRFEAGIYAKCTGNAEITVVFK

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