NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310345_10146577

Scaffold Ga0310345_10146577


Overview

Basic Information
Taxon OID3300032278 Open in IMG/M
Scaffold IDGa0310345_10146577 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2104
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.7719Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014154Metagenome / Metatranscriptome265Y
F054103Metagenome / Metatranscriptome140Y
F064802Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0310345_101465773F064802N/AMVCVPMLPFVLQMSVIVLKTEETVRDLILFTKEKLLHENVDPTGMLPQTLIPPQLIDIPDDERRGVIKALRWVIADEDIFQRE
Ga0310345_101465774F054103N/AMKIYFNANNKATLEALEGCGVKNVLLSHRYSYANINKFKSKFDSIFIVPGTKGNPDKYHEFLKKKREYYDYATQFDVFYNMDETLKYLEKEREDGIDWTLPILQENYLQHISRLRPKTGDYICIGEVHGKMETEDQIRKLPQNVEYHGLAKGKYIEKRPFKSLDTSGWISAAMSKKTEVWSGNSTFSLFFGEKGRGMKAQVASTLERFSEYLEIVGISSKSVLENDYYSLLKLPIAVLYMPMCKSLGIYDMNFK
Ga0310345_101465775F014154N/AVAEDIFKIEPVGNKSLVVENKHKTISPFNSAKHLKTANLPALCNQCVYRSIEDGGNGKCPKYEADAVCSIRNDFINMINILD
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