NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310345_10629882

Scaffold Ga0310345_10629882


Overview

Basic Information
Taxon OID3300032278 Open in IMG/M
Scaffold IDGa0310345_10629882 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1035
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.7719Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013596Metagenome / Metatranscriptome270Y
F094574Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0310345_106298821F013596N/AMEVFAESLTILSIVVSMSVCAVLIARIYRKNSALDPKITNKLRKQQEEYIGEVERKNRSLQNKLNSMQKGPILSETGDLDSVLPELVGQLDGILPKWATKFLKSNPDIVNTVVEYAKSNPDKAKELIGKFVKIGPKAKTSDDATLLGL
Ga0310345_106298822F094574N/AMSIMDTKLRSFNITSSKMYERFKQIQLERGKNATLRLNELIEKEVKEADPQFKELTAIRSKDAPDIIIPNPFVLDQFHSIPKWIEYLQTLTKEQHSELYNHVFAIQLATKEFEDHRL
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