NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315286_10034526

Scaffold Ga0315286_10034526


Overview

Basic Information
Taxon OID3300032342 Open in IMG/M
Scaffold IDGa0315286_10034526 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5285
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5096Long. (o)-110.3556Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098523Metagenome103N
F098576Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0315286_100345262F098576N/AMTLCIQPQSIAHQRLGGRAGPQETLVFLRRVEVPVPAPVEPLQTKGVSNPRHFVVTHSHRHGVTTGLVIGQKGQRKPTPAESIKLLQLDFEPDREEFVEVTEVAPVFLSKPRRNPETTGGERARLIAQWAGRLYDMTASWQGPIGMQLAYLFAAMARGSHVALKRHSALVRLLRQEGVPTSDPIWKYIRIEE
Ga0315286_100345264F098523AGGGGGVDLDKLKDALQKARIAFSERLVPHANPATTCLVVQRVGYALSVTPTLYYRGPVVEIRPSGGPRISFISNKDPAELVAVMDTFVQVRKWAARLQPKWATRQLALITGSNPGSPVLVYEPCCARLAIIPRPASFNQLHKHSPVKKYKIGASPKLIATDLIQLHQENTPKRSWESFVEDWNCQYSASFGHELALSASYIYAWNGMRFLMDGDELSMDVWGPVFSAAFPEAIRLLESIQAVLGKTVKGRGNEGGPPGEAVPV
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Institute for Fundamental Biomedical Research
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