NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315286_11527055

Scaffold Ga0315286_11527055


Overview

Basic Information
Taxon OID3300032342 Open in IMG/M
Scaffold IDGa0315286_11527055 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)639
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5096Long. (o)-110.3556Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003290Metagenome / Metatranscriptome495Y
F013485Metagenome / Metatranscriptome271Y

Sequences

Protein IDFamilyRBSSequence
Ga0315286_115270551F003290GGAMANPTTYFGWVMPTATDLVTDLPADFNVFGQGVDTSMQYLLGGTTGQVLSKTSATNMAFTWIANDQGDITGVTAGN
Ga0315286_115270552F013485N/ATTTIKHAADAASQAAFYLELRAYPQPIFDSITYALTNPELDNADRDALINIFMGQPIALNDLPANMSSGVFQGFVEGWTFRASYNELSVTLLMSPLAYSLQAMQWNDVPIVELWNSVSPTLEWQYATIVS
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