NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0325403_1002996

Scaffold Ga0325403_1002996


Overview

Basic Information
Taxon OID3300032354 Open in IMG/M
Scaffold IDGa0325403_1002996 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15221
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (10.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002024Metagenome603Y
F003967Metagenome459Y
F029605Metagenome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0325403_100299611F002024N/AMEIIKHKSRNNRVKLLIIPTYSITNYDLNSTLTITTQ
Ga0325403_100299612F002024N/AMKIIKHKSCNNRVKLLIIPTYAITDYELNSTLTITIQQIIQLL
Ga0325403_100299613F002024N/AMKIIKHKSCNNRVKLLIIPTYSITNYEENSTLTITIQQIIQLL
Ga0325403_100299614F029605N/AMEIIKQKSCNNRVKLLIIPTYSITNYELNSTLTITIQQIIQLLWQHNNKIY
Ga0325403_100299616F002024N/AMEIIKHKSCNNRINLLIIPTYSITNYELNSTLTITIQQIIQLL
Ga0325403_100299617F029605N/AMEIIKQKSCNNRVKLLIIPTNSITNYELSSTLTITIQQINQLLWQHNNKIYSINSKNKTL
Ga0325403_100299619F002024N/AMEIIKHKSCNNRINLLIIPTYSITNYEVNSTLTITIQQIIQ
Ga0325403_100299620F003967N/AMFQNLISRYGSRLRDFWYESQKKAKKTARDKCLQGWNDVAVWRYFKSIYIPTDIWPHYLEHVMSERFTRRSQFGAGNRNQPIHGSVTTHTGGFVPFAANAKQMVRLI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.