NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325403_1005517

Scaffold Ga0325403_1005517


Overview

Basic Information
Taxon OID3300032354 Open in IMG/M
Scaffold IDGa0325403_1005517 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11944
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (21.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001798Metagenome632Y
F010588Metagenome301Y
F011631Metagenome288Y

Sequences

Protein IDFamilyRBSSequence
Ga0325403_100551711F001798N/AVDLVDSSTQALWLDDMTLIHSAFSKVFFMNVVGNQLIFPHIKFQSIWITRARDMAKLLSSAVGGRGG
Ga0325403_100551713F010588N/AMLIANCLGFKHXSPCXVHIILILTPLVKLYHLDIINLARHNKEEEHK
Ga0325403_100551714F011631N/AMPGLKLKXDASGGKTIHEGALVLVGFMWSLSVLTRLFSLFSLXSEWLSSSAIFSENNEDTLQRLSLNIRDQTLMHV
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