NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325403_1009381

Scaffold Ga0325403_1009381


Overview

Basic Information
Taxon OID3300032354 Open in IMG/M
Scaffold IDGa0325403_1009381 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9341
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008251Metagenome336Y
F083463Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0325403_100938110F008251N/AMCIYLYNYLLFLLSLHLFFNSHLKMDTTLEKLKKYFPALPQNAITKIYHARCARLRLLMNHGIPKDICWLIEAKVRLSGESSNFFISYMLRTSKSTFAKKRCAKXLKVCHRCARWTCNATCCSLGMVSVNHEDKIQFIKDGLSKESLDNFILTLKTHRSGDVHRAIHDLWQQFHIEHDRLSLGNLTIKDHVCQFLRKLDEKPIHDS
Ga0325403_10093817F083463N/AMQIRIIIEHKYSSSHQKQICSYRKERKKGVFVSIFTNQERNTKISRTHPRLRVIGRINTGGQRINKKI
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