NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0325403_1024804

Scaffold Ga0325403_1024804


Overview

Basic Information
Taxon OID3300032354 Open in IMG/M
Scaffold IDGa0325403_1024804 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5252
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037820Metagenome167Y
F055312Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0325403_10248041F055312N/AVDVTALGTQKLLSRLTRGFDSPDSPLGTQKLLSRVTCGFDSPHTFLGSQKLLSRVTCGFDSPHTSLGSQKLLS
Ga0325403_10248043F037820N/AVDSTALGSQKLLSRVTRAFDSPHSLLGTQKLLSRVTRGFDRPDSPLGSQKLLSRVTRGFDSRDSPLGSQILLSRVPRGFDSPHTSLGSEKLLSRVTRGFDSPHTSVGSQKLPSRVTRGFHSPHTSLGTQKLLSRVTRGFDSPHSPVGTLK
Ga0325403_10248047F037820GGAMINELLSPVTRGFDRPDSPLGTEKLLSQVSRGFDSPIGSQKLLSRVTRGFDRPDSPKGSQKLLSRVTRGFDRPDSPKESQKLLSPVTRGFDSPYTFLGSQKLLPRVTRGFYSPHNPQGTL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.