Basic Information | |
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Taxon OID | 3300032355 Open in IMG/M |
Scaffold ID | Ga0325401_1001015 Open in IMG/M |
Source Dataset Name | Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 22748 |
Total Scaffold Genes | 28 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (42.86%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 32.1348 | Long. (o) | -81.9657 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011631 | Metagenome | 288 | Y |
F029945 | Metagenome | 186 | Y |
F060474 | Metagenome | 132 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0325401_10010151 | F029945 | N/A | VRKDKVLSPHDLAFQLIKRKKNFKAKFSTNLVLKEKLTTIIFEGKKTHEKKHCSN |
Ga0325401_100101525 | F060474 | GGA | MFILREDHDLQAKFAFLARKVEALELKKNGQLKYAQDIVCQICETNEHSTNDCPTLPFFKECLHE |
Ga0325401_100101528 | F011631 | AGAAG | MPGLKLKXDALGRKTMYEGALVLVGFIWSLSVLTRLFSLXSDWLSSSTIFSENDEDTLQSLLLNVHDQTLMHV |
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