NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325401_1009837

Scaffold Ga0325401_1009837


Overview

Basic Information
Taxon OID3300032355 Open in IMG/M
Scaffold IDGa0325401_1009837 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9284
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008251Metagenome336Y
F056276Metagenome137Y
F089605Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0325401_100983710F008251GAGGMNHGILEDIRWLIEAKVRLSSEFSNSFISCMPRISKSTFAKKKNHAKQLKVYHRCARWTCNATCHSLGMVSINCEDKIQFIKDGLSKGSLDNLLLTLETHPSGDVHHAIHDLWPQFHKEHDRLSLGNLTIKDPVCQFLRKLDGKPIPNP
Ga0325401_100983713F089605AGGAMAKLRKEMIGAVQTRTLFGNRVIYGVVDLGFKSALYGWKDKT
Ga0325401_10098379F056276N/AMRIGEEIQRREKEQIIAQIYTDISYYGKLKESTEVTEYRYPPFDRGEKD
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