NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308414_1000299

Scaffold Ga0308414_1000299


Overview

Basic Information
Taxon OID3300032356 Open in IMG/M
Scaffold IDGa0308414_1000299 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31328
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (92.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006252Metagenome / Metatranscriptome377Y
F008499Metagenome / Metatranscriptome332Y
F010840Metagenome / Metatranscriptome298Y
F019420Metagenome / Metatranscriptome229Y
F083527Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0308414_100029917F010840AGGAGGMNLPFSQPLDKITYGALAAATVIILTWALREFVGIDLPSEVQAVLAVIFGYVVSYHIPLSEVEAKAIAQTFYRK
Ga0308414_10002992F008499AGGAGLTTFRSKSEPRWKRKERSVLKALQATFGRVGDPSLARLLTSTGRVGHLTRFGVDGFVGNNPGFAVEVKARKHMLTKPTLDALLQTIDRAARFECIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKHKGDGDA
Ga0308414_100029939F019420AGGGGGMATYRDVIFWNGATGGDCEATVIQARLLGMVIELGDDDKRPDKMTAFYEVDGGGIIVYEVDCFEADGRMTARWQRVASLEEVRHNRAYAAYLKRLEL
Ga0308414_100029940F006252GAGMKSFDEQAAFGLPYERLIAQTAALLLYPHRLDLALVRLDAYAPLDFLIVDGERPVAALEVKRRSVRSDTYPTTIIPQTVVDAAKRLTIPVFAAILFLDGLTVFDVLRTPSTARWLRTRRGVLRKHREYDISERMVRIEEVHQPPRRSA
Ga0308414_100029942F083527GGAGGMSAFFGVKIQRQQPLVDAIRAAVAAKRRPVAARDRVYASEISNCDRRITFALLGCEPDAPRGDSPSALLGDAIHAHLEALLKEAFPGCVETEVRVMSGAVSGRIDALLTDENDALTVVDIKTVSAKEWASR
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