NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308414_1001008

Scaffold Ga0308414_1001008


Overview

Basic Information
Taxon OID3300032356 Open in IMG/M
Scaffold IDGa0308414_1001008 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18389
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (90.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F005631Metagenome / Metatranscriptome394N
F006252Metagenome / Metatranscriptome377Y
F008499Metagenome / Metatranscriptome332Y
F025895Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0308414_100100819F005631GGAGMRVNVSVDLDNALRKLLPRTPQIEAALDAGAAAAHSVMQVYPSPPAGSRYRRTGNLRQKLRIKKLSKTSRVVENTASYARFVYGMPQAWMHRGRWASLKDAAEEAKKEAIAVLKEMGR
Ga0308414_10010083F006252AGGAGGMKSFEEQAAFGLPYERAIAQAAALLLYPQCFDLTLVRLGKYAPLDFLLLDGVLPVAALEVKRRAVRSDTYSTTILPQSVFDAATRLAIPTYAAILFIDGLAIFDVVRTPSNVRWLRTRRGTVRKHREYDIKERLVKVETLHQRPKDSD
Ga0308414_10010086F004307AGGAMFKELIDNGKHSERPALNGAYVGYFLGVKERQRATFETRLSAEPELEDVFVFEFEIEDAEFDAPVRVSKWVRKPKRLTHPSNGKATNLYKTLAALYGVALMTDKQLDDAEEFVQTAAVGREYQLTLETKPSGWVEIVHIAPVRKAHNRKIREDEEVPF
Ga0308414_10010087F008499AGGAMRKSRSEPRWKRKERDAIKALQAIFGRVSDPSLARLLTSTGRVGHLTRFGVDGFVGDNPGFAVEVKARKKMLTKQTIEALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVEREWVMMPRRVLEEIVGKERKDEGITDA
Ga0308414_10010088F005028GAGGMRDDDLHAAMAFFAARLRGAEVTEAGLRRWTRHKLRNDAQAVAELMLTVGYRPTYIRYFLRYHIRAVDPEGDSEDVTLAVADLHAAAKRLRQPYRDLAAVCLKWGYVHETVVQMLAKVLDKRGEVDIQKGRMGYE
Ga0308414_10010089F025895AGGAMSDLIAWIVAGGVILALVNSNVADGLLNALDLSDNLKRAVDWARGVRGVPAGVASVCFFILAYVFGALAYRYDLVPTWRFIQPIAADVLATGAEWLTLFTLFVTLLPTLIELATVGLMQRDIKALQWMLYFFVFFDIVTDYREAVELVEVWQRGELFAPLPGALQGTTMVLAKVGWTFAASFAFEFLAILFAVTALLLAANVRATGGGGR
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