Scaffold Ga0308414

Basic Information
Taxon OID	3300032356 Open in IMG/M
Scaffold ID	Ga0308414_1001302 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS50
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS50

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16248
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (95.83%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	10 (100.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

16248

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (95.83%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

10 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002982	Metagenome / Metatranscriptome	515	Y
F004307	Metagenome / Metatranscriptome	444	Y
F005028	Metagenome / Metatranscriptome	414	Y
F006252	Metagenome / Metatranscriptome	377	Y
F007976	Metagenome / Metatranscriptome	341	Y
F008499	Metagenome / Metatranscriptome	332	Y
F031016	Metagenome / Metatranscriptome	183	Y
F074922	Metagenome / Metatranscriptome	119	N
F076715	Metagenome / Metatranscriptome	117	N
F087842	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308414_100130216	F031016	AGGAGG	MVTIRIWSGSRRVVCGEDYEFVKYEEFEGETLGSVWEEENSRGTQTTFYQTNDGRIVAHVVRWSRWEGEATHAYIHVFPSMGGVNGAAAMFWRELEQAGLIPPRTVGLDEVDGR
Ga0308414_100130217	F002982	GGAGG	VKIQFERHPHAICVVLTDAGECDRIITVARPSDAIDALALDIHTAALKPLDALFALPRVVCVEIEQRSGGWRVEVAYWHKGLGTLAQYEEDAATLSEALARCVWALAR
Ga0308414_100130218	F087842	AGGAGG	MITIWGGYIAAGDARVYLISFDGERIGGVEDGRNVQRTFYRTRDGRVVVHEVRSGRRRGGRTYDQALVYVFSNITEACAHLDVHPQRIAQTRGEATLPDVDAPTLTLDEWVRGVGTY
Ga0308414_10013022	F006252	AGGGGG	VRSFDEQAAFGLPYERVIAQTAALLLYPNRPGLTLARLDARAPLDFLLFDGGSPVAALEVKRRSIRSDVYRTTILPQSVFDEAKRLTVPTFAAILFVDGLAVFDVIRTPSTARWLRTRRGTLRKHREYDIRERLVKIEAVHQLSR
Ga0308414_100130220	F074922	AGGA	MVDSMLAQFLNVALDVQTPAYAGIRVTGGTLAASDGVILVAFKLNSEYIRGEGMIPPATARALAALANEVYLEYVEVDGTAVSLVTREQYADRAECLTVSFPPFACRTLRIESFLPRCTPPDATLLCEAPSLKLVKAARLTDFVELVDKPVCGSELFQLKLPDAKVWYSVRQLREGLRLFRARDSVSVFRNDQGWLSFRDDWGRLFAVTPFVKRD
Ga0308414_100130221	F007976	AGGA	MPSSELAHFLNVAIDIQATPFLGIHVADGVILATDGVMLVAKKFDNKVFLRGEGAISPKAAKVLEALAEATWIGSIAVVGNRVTATAQTTRYDEKAGGEVAGEYCDVSLPEFYCPRAPVARMLAVLTDESRGWETVAENPNVKVLKEMSARDYVALIDNPRNGGELFRPKEIDDPHWYSVAQLRRGLRLFGKNSRLSVRRNSSGGLTFSDQWGYTFAVTPFVKHN
Ga0308414_10013025	F004307	AGGAG	MFKELIQNGKGGYERPELNGAYIGRFLGVKERQRPTFETRLSPEPELEDVFVFEFEIVDADLDLPVRVSKWVRKPKRLAHPSKSGKVTNLYRVLTALYGVAQMTEEQLHGAEEYVQTVAVGREYQLTLETKPSGWVEIVHIAPVRARRKEKQIDEVPF
Ga0308414_10013026	F008499	AGGAG	LTKCRSEPRWKRKERGVLKALQATFGRVSDPSLARLLSSTGRVGHLTRFGVDGFVGDNPGFAVEVKARKHMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERNDE
Ga0308414_10013028	F005028	AGGAG	MRDDDLRAAMSFFAARLRGAELDETRLLRWTRHKLRSDAQAVAELMLTVGYRPTYIRYFLRYHIPALNESAAVGETYADPGAAAEAHLGLCWRLDEGVLTVYTDLHSAAKRLRQPYRDLAAVCLKWGYVHETVVQLLAKTLERKAKNVVEN
Ga0308414_10013029	F076715	AGGA	MWWKIEEVPHQELEDWERALLQCENRAKRDPMLRAVGVFVIFVREGGTRPEYAPGDKAPEGAYLVGKWTLKKKGWMWYD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308414_1001302

Overview

Ecosystem & Geography

Associated Families

Sequences