NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308414_1005459

Scaffold Ga0308414_1005459


Overview

Basic Information
Taxon OID3300032356 Open in IMG/M
Scaffold IDGa0308414_1005459 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7750
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F006252Metagenome / Metatranscriptome377Y
F008499Metagenome / Metatranscriptome332Y
F018115Metagenome / Metatranscriptome236Y
F025895Metagenome / Metatranscriptome199Y
F076715Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0308414_100545910F006252AGGAGGVRSFDEQAAFGLPYERVIAQTAALLLYPHRLDLTLVRLDAYAPLDYLLLDGDCPVAALEVKRRSVRSDTYPTTIIPQSVVDAAKRLTIPVYAAILFTDGLAVFDVLRTPSSVRWLRTRRGVLRKHREYDIKERLVKVEEVHQRQRRSA
Ga0308414_10054592F025895GGTGGMSDAFAWIIAGGVILALVNSNVADGLLSALDLSDNLKRAVDWARGVRGVPAGVASVCFFILAYVFGALAYRYDLVPTWRFIQPIAADVLATGAEWLTLFALFLTLLPTLIELATVGLVQRDIRALQWMVYFFVFFDIVTDFGEAVALVEVWQRGGLFAPLPDALEGAAAVLAKVGWTFAASFAFEFLTILCAVTALLLAANVRAPGGSGGGGR
Ga0308414_10054593F076715AGGAMWWKIEEVPHQELEAWASAVYSCERRAKRDPATRAAGVFVMFVREGSTKPEYAPGDKAPEGAYLVGKWTLKKKGWMWYE
Ga0308414_10054594F005028GGTGGMRDDDLRAAMSFFAARLRGAELDETRLLRWTRHKLRSDAQEVAALMLHVGYRPTFIRYFLRYHIPALNESAAVGETYVDLDAAAEAHLGLCWRLDEDVLTVYSDLHAAAKRLRQPYRDLAAVCLRWGYVHETAVRLLAKELERKHRNVVED
Ga0308414_10054595F018115AGGAGMNDAEERFVRRYAHLPPDAPLDRHAARALLRRALTDREALAEYLLNNECTPALLGEFINRHWNAALSDALDSAALRLTLRVMHAVWCIEDARDRRAVLVCFRRGIIPNTKIMRRLCGVVRNA
Ga0308414_10054596F008499AGGAMKSHSKSEPRWKRKERSALKALQATFGRVSDPSLARLLSSTGRVGHLTRFGVDGFVGDNPGFAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERKDE
Ga0308414_10054597F004307AGGAMFKELISNSGNGRERPELNGAYIGRFLGVKERQRPTFETRNAPEPVMEDAFVFEFEVRDFEVEEPIRVSKWVRKPARLDHPGKSGKATNLYKVLAWLYGVSVMTDAQLERAEEFIQEAVGREYQLTLQTKPNGWCEIIHIAPVRARLRKEETIDEVPF
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