NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308414_1014423

Scaffold Ga0308414_1014423


Overview

Basic Information
Taxon OID3300032356 Open in IMG/M
Scaffold IDGa0308414_1014423 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4228
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F015735Metagenome / Metatranscriptome252Y
F063723Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0308414_10144231F063723N/ARGAVLVWDEVQVSLDSREWSSEAARSLTRDMILWGKRGIVCVYTSPSFATVDVRLRRLTQYVYVTAGRYRRSGADYAVYRWHEHPYSDDLLVERYRFGLRLDAWYGVYDTLYGASVGDTLAILPAPAPAPALARCRG
Ga0308414_10144232F002229GGAGGMVTLLTLDGVEEIDYVPSDAEIRASLDDRALYGMVLHGVTWMRLVSGVGWWTVIGGRRITATLAAIGWCWAADSCGNRGYWSATLSAVVGDVCAMYGGAVED
Ga0308414_10144233F002795AGGAGGMATNDGLVLRGMVAAYREFISRKDGKVYRVVTVYGDLMSGETVLCQIDGYDVFVDTPGYARGELVELPARLQFVRDASGKPAVRLYVDEGVR
Ga0308414_10144234F002372AGGMPTRREDRLWSVVHQRSAHLRALLDGLDGVDIGVTYELDYYPYAIVELLRVREDAPPLVLRSVYIQANRQWEHHSEFALRVIDAALQLVEGYRADPSLGGAEAVWA
Ga0308414_10144235F015735AGGCGGVIVYHHWSVEWHPRDDPPHGLPRVVCVARRAVSDPFAGPGPFPPDVDRSVRYWNLVASGGATDHGAGYEVAWRVSVVADDADGDAPDSAWSDAPVYRARRRLLRWIMRSQCPLFADHFAAEHFRDRPEYFGLLEPGA
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