NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315334_10584739

Scaffold Ga0315334_10584739


Overview

Basic Information
Taxon OID3300032360 Open in IMG/M
Scaffold IDGa0315334_10584739 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)962
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012466Metagenome280Y
F090619Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0315334_105847391F012466N/AALPMVFDYTIIENNIEADTDSQEFINHIGDILVVLLDEKLKDEGPRYE
Ga0315334_105847392F090619AGGAMSSERFILIREKVPINDDGTVFKEFNANEKFRRQDISVMLKLLPLIQKYKLDFLPKIVDYNEDGYTYEWVDGQTLKEEIDNGVLKLTQKKILEMKMAMDDIWKKFYQISIENRDDEIFGGNGFLYHGDPWLGNVIWNDDTKEFKFIDIDSLSIAEFVPLTQLNNMFFQHLETLLVIQNKNQSTLGTWI
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