NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0318632_104687

Scaffold Ga0318632_104687


Overview

Basic Information
Taxon OID3300032372 Open in IMG/M
Scaffold IDGa0318632_104687 Open in IMG/M
Source Dataset NameMetatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T1 (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)806
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Plant Litter Microbial Communities From East Loma Ridge, Irvine, California

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.7416Long. (o)-117.7042Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060491Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0318632_1046871F060491N/ALEYTKSGSFWELLQDSAQFAVSVAKSVDFMKDIIKLRVMLESSLSRIAKDIGHDGFFMEILASLTIGAVASLMVLLAGLSLVLDMGQDLSLKFISSVSKAALVAKLAFTLKFPVLAHFSLVLSLIVLNKETSFFSGSEVLLLRLNINLKGRAVYSTVSRVDAARSRDVSSVFGIRV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.