NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325400_1073344

Scaffold Ga0325400_1073344


Overview

Basic Information
Taxon OID3300032374 Open in IMG/M
Scaffold IDGa0325400_1073344 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2518
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001257Metagenome736Y
F040409Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0325400_10733441F040409N/ALKTFISNVMFPKDNFITPFLQLINALEVARNGRPKITEIELHASTDCVSKTIKSTR
Ga0325400_10733445F001257AGGMNSVRPKSAIFKFKVWPQKRSQNLSCNPAQTLLRRLSISGVLEGQMMXNLVGGRKRQFPTTFMKTIFSNSDGNNDSLSRQELEVYPPRPLTALLSILAISQALVIQMLXNFMGDKIRXFPTTFMRKTLPNSEWSNVTSSSQSAXVLLSTKSTKSIVGHYINNQLPNE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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