NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325400_1093366

Scaffold Ga0325400_1093366


Overview

Basic Information
Taxon OID3300032374 Open in IMG/M
Scaffold IDGa0325400_1093366 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2017
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002798Metagenome529Y
F006456Metagenome372Y
F040184Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0325400_10933663F040184GAGMQSYHLYVGQLEPLSLYYFIIIIFFKNVYVQAVVIVAHIFPWFYVQEQLKRPL
Ga0325400_10933664F002798N/AMVSVNRKDKIQFIKDGLSKESLDNLLLTLETHPNGNVHRAIHDLWPQFHKEHARYSLGNLTKKDPVCQFLRKLDGKHIPDL
Ga0325400_10933665F006456N/AMDTTLEKLKKYFPALPKNAITKIYRARCERLRLLMNHGIPEDIRWLIKAKVRLLGESSNSFISYMPGTGKSTFAKKRCAKRLKVCHRCAR
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