NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325405_1000004

Scaffold Ga0325405_1000004


Overview

Basic Information
Taxon OID3300032389 Open in IMG/M
Scaffold IDGa0325405_1000004 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)191739
Total Scaffold Genes159 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)76 (47.80%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008251Metagenome336Y
F046151Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0325405_1000004122F008251N/AVQFFALSPFFESLLNSYLKMDTTHEKLKKYFPALPQNTITNIYRASCARLRLLMNHGIPEDICWLIEVKVRLSGESSNSFISYMPGTGISTFAKKRCVKRLKVCHRCARWTCNATCRSLRMVSVNREDKIQFIKDGLSKGSLDNLLLTLETHPSGDVHRAIHDL
Ga0325405_10000049F046151GGAGMVVEAAEAADVGYKRRRSPPMVEENPGDDTTEESTGGAARKEGCTAEEEESWTAGAAEFEDVYGGCSI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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