NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325404_1000117

Scaffold Ga0325404_1000117


Overview

Basic Information
Taxon OID3300032390 Open in IMG/M
Scaffold IDGa0325404_1000117 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)74538
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (38.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038486Metagenome165Y
F043970Metagenome155N
F087982Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0325404_100011725F038486AGGMEDSTDNPSANIIPFPTRTILDGEIIQTYAMGTHLNKAIKADSSIPMDFNPNRIIKQDNPLHSQTPMLWGRHPVMIFMR
Ga0325404_100011760F087982AGTAGVESPFCYYDLVEINSKARLHNVNDVFVFAKQCQQIYYTYTSFFRNDCSRVDWLSILKMKPKGRVEVVQDENEDTSVGDDVFQVIELVEPYRVAPSIDLEKNSIFCAFDNSKS
Ga0325404_100011762F043970N/AMYLLFLFGFFIIINVLFSNEVSFNISIGCWSLNELFQKIQRRNLEQRIEEKFS
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