NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315287_10217786

Scaffold Ga0315287_10217786


Overview

Basic Information
Taxon OID3300032397 Open in IMG/M
Scaffold IDGa0315287_10217786 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2234
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5072Long. (o)-110.3564Alt. (m)Depth (m)87
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002843Metagenome / Metatranscriptome526Y
F015354Metagenome / Metatranscriptome255Y
F063343Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0315287_102177862F063343N/AMNYLILLGILGLFILGNKVRTNWVSGIKSTLIKLMIPGADRRLFSGFTQSSFSWVRNPASWVRVFNWTGYAAGINGLGGVGGGTLISRRHVLFANHVPYPARPIDIFFVNKDSRTFNYKVTNVQQVGSTDISIGTLDKDADPSLIVYRVLPDNWLQYIANKPVPLTATYIAAGITTPIQTFVLPILYTGQDRKVSTGDVININLAGNASVSIPAFEPARAFGDGVRGGDSGNPIFAMLGDELVLLGGWYTGADGDATVGTFPWLLYQKSAIEKIMGMKLQVADMSGLTRIA
Ga0315287_102177864F015354N/AMNPNLSSLIRHGLTAAGGFLVAKGLASADQIGELAGAIVTIAGLVLSMLKNKKATVPTPPPAA
Ga0315287_102177867F002843N/AMIVPVDIVAVQVNQNNSLFVTTGIDYDSDGAVMGSEITSQYTLVPGDSLEGQPTEVVNIATALWTPAVVAAYKLANPVPDNSVPVS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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